Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W _ __init__() (de_twin.clock.Clock method) (de_twin.clock.ManualClock method) (de_twin.column.Column method) (de_twin.column.ColumnAdapter method) (de_twin.column.corrector.Corrector method) (de_twin.column.CorrectorUnit method) (de_twin.column.lowdose.LowDose method) (de_twin.column.lowdose.LowDoseArea method) (de_twin.column.MeasurementResult method) (de_twin.column.MirrorColumn method) (de_twin.column.SoapTemChannelClient method) (de_twin.crystal.library.CrystalLibrary method) (de_twin.detector.CameraModel method) (de_twin.detector.Detector method) (de_twin.faces.deapi_server.TwinDeapiServer method) (de_twin.faces.shm_face.ShmFace method) (de_twin.faces.temchannel_soap.TemChannelServer method) (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) (de_twin.optics.aberrations.Aberrations method) (de_twin.optics.Calibration method) (de_twin.optics.OpticsConfig method) (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) (de_twin.processing.Processor method) (de_twin.render.RenderConfig method) (de_twin.render.Renderer method) (de_twin.specimen.Specimen method) (de_twin.specimen.SpecimenConfig method) (de_twin.state.AcquisitionRequest method) (de_twin.state.ExposureMode method) (de_twin.state.FrameMeta method) (de_twin.state.HolderState method) (de_twin.state.MicroscopeState method) (de_twin.state.RenderMode method) (de_twin.state.ScanRequest method) (de_twin.transport.shm.FrameConsumer method) (de_twin.transport.shm.FrameProducer method) (de_twin.twin.DigitalTwin method) A aberration() (de_twin.column.CorrectorUnit method) (de_twin.column.SoapTemChannelClient method) Aberrations (class in de_twin.optics.aberrations) aberrations (de_twin.column.MeasurementResult attribute) aberrations() (de_twin.column.SoapTemChannelClient method) aberrations_string() (de_twin.column.CorrectorUnit method) acquire() (de_twin.processing.Processor method) (de_twin.twin.DigitalTwin method) acquiring() (de_twin.transport.shm.FrameProducer method) acquisition_index (de_twin.state.AcquisitionRequest attribute) AcquisitionRequest (class in de_twin.state) adaptive_margin (de_twin.render.RenderConfig attribute) add_descan (de_twin.render.RenderConfig attribute) adu_cv (de_twin.detector.CameraModel attribute) adu_per_electron (de_twin.detector.CameraModel property) adu_per_electron_at() (de_twin.detector.CameraModel method) adu_table (de_twin.detector.CameraModel attribute) advance() (de_twin.clock.ManualClock method) aliases (de_twin.detector.CameraModel attribute) alignment_file() (de_twin.column.SoapTemChannelClient method) alignment_json() (de_twin.column.CorrectorUnit method) alpha_selector (de_twin.state.MicroscopeState attribute) amplitude_contrast (de_twin.render.RenderConfig attribute) angle_mrad (de_twin.column.MeasurementResult attribute) apply() (de_twin.column.lowdose.LowDose method) area (de_twin.column.lowdose.LowDose attribute) areas (de_twin.column.lowdose.LowDose attribute) as_dict() (de_twin.column.lowdose.LowDoseArea method) B backlash_um (de_twin.optics.realism.ColumnRealism attribute) bad_column_fraction (de_twin.detector.CameraModel attribute) bad_pixel_mask (de_twin.detector.Detector property) base_focus_um (de_twin.column.lowdose.LowDose attribute) batch_dict() (de_twin.column.SoapTemChannelClient method) batch_field() (de_twin.faces.temchannel_soap.TemChannelServer method) beam_blank_cmd (de_twin.state.AcquisitionRequest attribute) beam_blanked (de_twin.state.MicroscopeState attribute) beam_on_detector() (de_twin.twin.DigitalTwin method) beam_reaches_detector (de_twin.state.AcquisitionRequest property) beam_shift (de_twin.column.lowdose.LowDoseArea attribute) beam_shift_um (de_twin.state.MicroscopeState attribute) beam_stop_radius_px (de_twin.render.RenderConfig attribute) beam_tilt (de_twin.column.corrector.Corrector property) beam_tilt_mrad (de_twin.state.MicroscopeState attribute) begin() (de_twin.transport.shm.FrameConsumer method) bias_v (de_twin.state.HolderState attribute) bit_depth (de_twin.detector.CameraModel attribute) (de_twin.state.AcquisitionRequest attribute) blanked (de_twin.state.FrameMeta attribute) bounds_um() (de_twin.specimen.Specimen method) bs_matrix() (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) bs_rotation_sigma_deg (de_twin.optics.realism.ColumnRealism attribute) bs_scale_sigma (de_twin.optics.realism.ColumnRealism attribute) bs_skew_sigma (de_twin.optics.realism.ColumnRealism attribute) busy (de_twin.column.Column property) (de_twin.column.corrector.Corrector property) (de_twin.column.CorrectorUnit property) (de_twin.holder.ImpulseFollower property) (de_twin.holder.SimHeatingHolder property) bytes_per_pixel (de_twin.detector.CameraModel attribute) C Calibration (class in de_twin.optics) calibration_truth() (de_twin.twin.DigitalTwin method) call() (de_twin.column.SoapTemChannelClient method) camera() (in module de_twin.detector) camera_inserted (de_twin.state.AcquisitionRequest attribute) camera_length_mm (de_twin.state.MicroscopeState attribute) camera_model (de_twin.state.AcquisitionRequest attribute) (de_twin.twin.DigitalTwin property) CameraModel (class in de_twin.detector) cc_mm (de_twin.optics.OpticsConfig attribute) ceos() (de_twin.column.MeasurementResult method) charge_spread (de_twin.detector.CameraModel attribute) charge_spread_at() (de_twin.detector.CameraModel method) chi() (de_twin.optics.aberrations.Aberrations method) cl_ladder() (de_twin.column.Column method) (de_twin.optics.Calibration method) clear() (de_twin.processing.Processor method) Clock (class in de_twin.clock) close() (de_twin.column.Column method) (de_twin.column.ColumnAdapter method) (de_twin.column.MirrorColumn method) (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) (de_twin.twin.DigitalTwin method) cluster_area_px (de_twin.detector.CameraModel attribute) coeffs (de_twin.optics.aberrations.Aberrations attribute) coherent_auto_max_pattern_px (de_twin.render.RenderConfig attribute) coherent_beam_tilt (de_twin.render.RenderConfig attribute) coherent_cache_mb (de_twin.render.RenderConfig attribute) coherent_field_max_px (de_twin.render.RenderConfig attribute) coherent_focal_samples (de_twin.render.RenderConfig attribute) coherent_focal_spread (de_twin.render.RenderConfig attribute) coherent_incoherent_scattering (de_twin.render.RenderConfig attribute) coherent_max_grid (de_twin.render.RenderConfig attribute) coherent_max_modes (de_twin.render.RenderConfig attribute) coherent_mode_power (de_twin.render.RenderConfig attribute) coherent_object_bandwidth_inv_nm (de_twin.render.RenderConfig attribute) coherent_probe_tail (de_twin.render.RenderConfig attribute) coherent_read_ahead (de_twin.render.RenderConfig attribute) coherent_sampling() (de_twin.render.Renderer method) coherent_source_size (de_twin.render.RenderConfig attribute) Column (class in de_twin.column) column_valves_open (de_twin.state.MicroscopeState attribute) ColumnAdapter (class in de_twin.column) ColumnDefinition (class in de_twin.optics.serialem) ColumnRealism (class in de_twin.optics.realism) ColumnRefused condenser_aperture_index (de_twin.state.MicroscopeState attribute) condenser_apertures_um (de_twin.optics.OpticsConfig attribute) condenser_stig (de_twin.state.MicroscopeState attribute) condenser_stig_nm_per_unit (de_twin.optics.OpticsConfig attribute) condenser_stig_zero (de_twin.optics.OpticsConfig attribute) connect_holder() (in module de_twin.holder) CONTINUOUS (de_twin.state.ExposureMode attribute) convergence_mrad() (de_twin.column.Column method) convergence_semi_angle_mrad (de_twin.state.MicroscopeState attribute) copy() (de_twin.optics.aberrations.Aberrations method) (de_twin.specimen.SpecimenConfig method) (de_twin.state.HolderState method) (de_twin.state.MicroscopeState method) correct() (de_twin.column.corrector.Corrector method) (de_twin.processing.Processor method) Corrector (class in de_twin.column.corrector) corrector (de_twin.state.MicroscopeState attribute) corrector_acquire_tableau() (de_twin.column.SoapTemChannelClient method) corrector_correct() (de_twin.column.SoapTemChannelClient method) corrector_endpoints() (de_twin.column.SoapTemChannelClient method) corrector_error() (de_twin.column.SoapTemChannelClient method) corrector_fetch_alignment_file() (de_twin.column.SoapTemChannelClient method) corrector_get_config_option() (de_twin.column.SoapTemChannelClient method) corrector_info() (de_twin.column.SoapTemChannelClient method) corrector_measure_c1a1() (de_twin.column.SoapTemChannelClient method) corrector_present() (de_twin.column.SoapTemChannelClient method) corrector_put_alignment_file() (de_twin.column.SoapTemChannelClient method) corrector_read_back() (de_twin.column.SoapTemChannelClient method) corrector_reconnect() (de_twin.column.SoapTemChannelClient method) corrector_result() (de_twin.column.SoapTemChannelClient method) corrector_set_config_option() (de_twin.column.SoapTemChannelClient method) corrector_status() (de_twin.column.SoapTemChannelClient method) corrector_unit() (de_twin.faces.temchannel_soap.TemChannelServer method) corrector_wait() (de_twin.column.SoapTemChannelClient method) CorrectorError CorrectorUnit (class in de_twin.column) counting (de_twin.state.AcquisitionRequest attribute) crossover() (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) crossover_intensity (de_twin.optics.realism.ColumnRealism attribute) crossover_sigma (de_twin.optics.realism.ColumnRealism attribute) CrystalLibrary (class in de_twin.crystal.library) crystallinity (de_twin.render.Renderer property) crystallinity() (de_twin.specimen.Specimen method) crystallization_enabled (de_twin.specimen.Specimen property) cs_mm (de_twin.optics.OpticsConfig attribute) current_a (de_twin.state.HolderState attribute) D DARK (de_twin.state.ExposureMode attribute) dark_current_adu_per_s (de_twin.detector.CameraModel attribute) dark_current_map() (de_twin.detector.Detector method) dark_map (de_twin.detector.Detector property) dark_offset_adu (de_twin.detector.CameraModel attribute) datacube() (de_twin.render.Renderer method) (de_twin.twin.DigitalTwin method) de_model (de_twin.detector.CameraModel attribute) dead_pixel_fraction (de_twin.detector.CameraModel attribute) default() (de_twin.optics.Calibration class method) default_camera_length_mm (de_twin.optics.OpticsConfig attribute) defocus_offset_um (de_twin.column.lowdose.LowDoseArea attribute) (de_twin.optics.OpticsConfig attribute) defocus_um (de_twin.state.MicroscopeState attribute) derive_optics() (in module de_twin.optics) descan_ramp_px (de_twin.render.RenderConfig attribute) descan_ramp_scale (de_twin.render.RenderConfig attribute) describe() (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) Detector (class in de_twin.detector) diffraction_cache_mb (de_twin.render.RenderConfig attribute) diffraction_contrast_scale (de_twin.render.RenderConfig attribute) diffraction_shift_mrad (de_twin.state.MicroscopeState attribute) diffuse_scattering (de_twin.render.RenderConfig attribute) DigitalTwin (class in de_twin.twin) drift_um() (de_twin.specimen.Specimen method) dsnu_adu (de_twin.detector.CameraModel attribute) dtype (de_twin.detector.CameraModel property) dwell_s (de_twin.state.ScanRequest attribute) E edge_taper_nm (de_twin.render.RenderConfig attribute) electrons_per_pixel (de_twin.state.FrameMeta attribute) enabled (de_twin.column.lowdose.LowDose attribute) (de_twin.state.ScanRequest attribute) end() (de_twin.transport.shm.FrameConsumer method) endpoint() (de_twin.column.CorrectorUnit method) endpoints() (de_twin.column.corrector.Corrector method) energy_spread_ev (de_twin.optics.OpticsConfig attribute) eucentric_height_um (de_twin.optics.OpticsConfig attribute) excite() (de_twin.crystal.library.CrystalLibrary method) execute_batch() (de_twin.column.SoapTemChannelClient method) expected_dark() (de_twin.detector.Detector method) expected_gain() (de_twin.detector.Detector method) expose() (de_twin.detector.Detector method) exposure_mode (de_twin.state.AcquisitionRequest attribute) exposure_s (de_twin.state.FrameMeta attribute) ExposureMode (class in de_twin.state) extinction_distance_nm() (de_twin.crystal.library.CrystalLibrary method) F fallback_pixel_nm (de_twin.optics.OpticsConfig attribute) fallback_recip_inv_nm (de_twin.optics.OpticsConfig attribute) false_event_rate (de_twin.detector.CameraModel attribute) features() (de_twin.specimen.Specimen method) field_map() (de_twin.render.Renderer method) fieldmap_cache_size (de_twin.render.RenderConfig attribute) film (de_twin.specimen.SpecimenConfig attribute) film_halo (de_twin.render.RenderConfig attribute) flag() (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) flags (de_twin.holder.SimHeatingHolder property) flat_angle_mrad() (de_twin.optics.aberrations.Aberrations method) flip (de_twin.state.ScanRequest attribute) flip_x (de_twin.optics.OpticsConfig attribute) flip_y (de_twin.optics.OpticsConfig attribute) flow_ul_min (de_twin.state.HolderState attribute) flux() (de_twin.twin.DigitalTwin method) fpn_column_adu (de_twin.detector.CameraModel attribute) fpn_pattern (de_twin.detector.CameraModel attribute) frame_index (de_twin.state.FrameMeta attribute) frame_time_s (de_twin.state.AcquisitionRequest attribute) FrameConsumer (class in de_twin.transport.shm) FrameMeta (class in de_twin.state) FrameProducer (class in de_twin.transport.shm) frames() (de_twin.twin.DigitalTwin method) frames_per_buffer (de_twin.state.AcquisitionRequest attribute) frames_per_point (de_twin.state.ScanRequest attribute) free_slots() (de_twin.transport.shm.FrameProducer method) from_mag_yaml() (de_twin.optics.Calibration class method) from_name() (in module de_twin.specimen) from_polar() (de_twin.optics.aberrations.Aberrations class method) from_serialem() (in module de_twin.optics.serialem) full_frame_time_s (de_twin.detector.CameraModel attribute) function_mode (de_twin.column.Column property) G GAIN (de_twin.state.ExposureMode attribute) gain_column_sigma (de_twin.detector.CameraModel attribute) gain_map (de_twin.detector.Detector property) gain_pixel_sigma (de_twin.detector.CameraModel attribute) gain_radial (de_twin.detector.CameraModel attribute) gain_stitch (de_twin.detector.CameraModel attribute) geometric_diffraction (de_twin.optics.OpticsConfig attribute) geometric_recip_inv_nm() (de_twin.optics.Calibration static method) geometry() (de_twin.crystal.library.CrystalLibrary method) get() (de_twin.column.Column method) (de_twin.column.ColumnAdapter method) (de_twin.column.corrector.Corrector method) (de_twin.column.SoapTemChannelClient method) get_corrector_beam_tilt() (de_twin.column.SoapTemChannelClient method) get_pair() (de_twin.column.SoapTemChannelClient method) get_property() (de_twin.column.SoapTemChannelClient method) get_stage_position() (de_twin.column.SoapTemChannelClient method) gradient() (de_twin.optics.aberrations.Aberrations method) grains (de_twin.render.Renderer property) ground_truth() (de_twin.render.Renderer method) (de_twin.twin.DigitalTwin method) ground_truth_ptychography() (de_twin.render.Renderer method) (de_twin.twin.DigitalTwin method) H handle() (de_twin.faces.temchannel_soap.TemChannelServer method) hardware_counting (de_twin.detector.CameraModel attribute) has() (de_twin.column.corrector.Corrector method) hd_rotation_deg_per_um (de_twin.optics.realism.ColumnRealism attribute) hd_scale_per_um (de_twin.optics.realism.ColumnRealism attribute) heater_power() (de_twin.holder.SimHeatingHolder method) heater_resistance() (de_twin.holder.SimHeatingHolder method) holder (de_twin.specimen.SpecimenConfig attribute) (de_twin.state.FrameMeta attribute) holder_state() (de_twin.twin.DigitalTwin method) HolderState (class in de_twin.state) home_um() (de_twin.specimen.Specimen method) hot_dark_current_adu_per_s (de_twin.detector.CameraModel attribute) hot_pixel_fraction (de_twin.detector.CameraModel attribute) hot_pixels (de_twin.detector.Detector property) ht_kv (de_twin.state.MicroscopeState attribute) ht_on (de_twin.state.MicroscopeState attribute) hw_binning (de_twin.state.AcquisitionRequest attribute) hw_quanta (de_twin.detector.CameraModel attribute) hw_roi (de_twin.state.AcquisitionRequest attribute) I illum_max_diameter_um (de_twin.optics.OpticsConfig attribute) illum_min_diameter_um (de_twin.optics.OpticsConfig attribute) illum_reference_alpha_mrad (de_twin.optics.OpticsConfig attribute) illum_reference_diameter_um (de_twin.optics.OpticsConfig attribute) illumination_profile (de_twin.render.RenderConfig attribute) illumination_semi_angle_mrad (de_twin.optics.OpticsConfig attribute) image_aberrations (de_twin.state.MicroscopeState attribute) image_rotation (de_twin.optics.realism.ColumnRealism attribute) image_shift (de_twin.column.lowdose.LowDoseArea attribute) image_shift_um (de_twin.state.MicroscopeState attribute) images (de_twin.column.MeasurementResult attribute) images_lost (de_twin.column.MeasurementResult attribute) ImpulseFollower (class in de_twin.holder) info() (de_twin.column.CorrectorUnit method) instrument_type (de_twin.column.Column property) (de_twin.state.MicroscopeState attribute) intensity (de_twin.column.lowdose.LowDoseArea attribute) (de_twin.state.MicroscopeState attribute) intensity_at() (de_twin.crystal.library.CrystalLibrary method) intensity_jitter (de_twin.render.RenderConfig attribute) intensity_zoom (de_twin.optics.OpticsConfig attribute) intensity_zoom_reference_mag (de_twin.optics.OpticsConfig attribute) interactive (de_twin.render.RenderConfig attribute) INTERVALS (de_twin.state.ExposureMode attribute) inv_xi() (de_twin.crystal.library.CrystalLibrary method) invalidate() (de_twin.render.Renderer method) is_astig_nm() (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) is_astig_nm_per_um (de_twin.optics.realism.ColumnRealism attribute) is_coma_mrad_per_um (de_twin.optics.realism.ColumnRealism attribute) is_matrix() (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) is_rotation_sigma_deg (de_twin.optics.realism.ColumnRealism attribute) is_scale_sigma (de_twin.optics.realism.ColumnRealism attribute) is_skew_sigma (de_twin.optics.realism.ColumnRealism attribute) is_tilt_mrad() (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) K key() (de_twin.optics.aberrations.Aberrations method) kind (de_twin.column.MeasurementResult attribute) (de_twin.state.HolderState attribute) L lattice_fringe_efficiency (de_twin.render.RenderConfig attribute) lattice_fringe_model (de_twin.render.RenderConfig attribute) lattice_fringes (de_twin.render.RenderConfig attribute) lattice_phase_rad (de_twin.render.RenderConfig attribute) load_alignment() (de_twin.column.corrector.Corrector method) lookup() (de_twin.processing.Processor method) LowDose (class in de_twin.column.lowdose) LowDoseArea (class in de_twin.column.lowdose) lowmag_illumination_factor (de_twin.optics.OpticsConfig attribute) M mag_ladder() (de_twin.column.Column method) (de_twin.optics.Calibration method) mag_mode (de_twin.state.MicroscopeState attribute) mag_modes() (de_twin.optics.Calibration method) mag_offset_fraction (de_twin.optics.realism.ColumnRealism attribute) mag_offset_um() (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) magnification (de_twin.column.lowdose.LowDoseArea attribute) (de_twin.state.MicroscopeState attribute) ManualClock (class in de_twin.clock) MAX_CORRECTOR_WAIT_MS (de_twin.faces.temchannel_soap.TemChannelServer attribute) max_fit (de_twin.column.MeasurementResult attribute) max_fps (de_twin.detector.CameraModel property) max_frame_bytes (de_twin.transport.shm.FrameProducer property) max_g_inv_nm (de_twin.render.RenderConfig attribute) max_margin_px (de_twin.render.RenderConfig attribute) max_raster_pixels (de_twin.optics.OpticsConfig attribute) max_value (de_twin.detector.CameraModel property) measure() (de_twin.column.corrector.Corrector method) MeasurementResult (class in de_twin.column) microscope (de_twin.state.FrameMeta attribute) microscope_state() (de_twin.twin.DigitalTwin method) MicroscopeState (class in de_twin.state) min_margin_px (de_twin.render.RenderConfig attribute) mip_phase (de_twin.render.RenderConfig attribute) MirrorColumn (class in de_twin.column) move_stage() (de_twin.column.Column method) (de_twin.column.ColumnAdapter method) N name (de_twin.detector.CameraModel attribute) (de_twin.specimen.SpecimenConfig attribute) names (de_twin.column.MeasurementResult attribute) nanoprobe_illuminated_um (de_twin.optics.OpticsConfig attribute) nearest_feature() (de_twin.specimen.Specimen method) NORMAL (de_twin.state.ExposureMode attribute) now() (de_twin.clock.Clock method) (de_twin.clock.ManualClock method) (de_twin.column.Column method) num_parts (de_twin.detector.CameraModel attribute) O objective_aperture_mrad (de_twin.optics.OpticsConfig attribute) objective_stig (de_twin.state.MicroscopeState attribute) objective_stig_zero (de_twin.optics.OpticsConfig attribute) on_change() (de_twin.column.Column method) on_ht_change() (de_twin.column.corrector.Corrector method) on_move() (de_twin.column.ColumnAdapter method) on_set() (de_twin.column.ColumnAdapter method) only() (de_twin.optics.aberrations.Aberrations method) op_state() (de_twin.column.Column method) (de_twin.column.MirrorColumn method) op_status (de_twin.state.MicroscopeState attribute) op_status() (de_twin.faces.temchannel_soap.TemChannelServer method) operation_status() (de_twin.column.SoapTemChannelClient method) operations() (de_twin.faces.temchannel_soap.TemChannelServer method) optics() (de_twin.twin.DigitalTwin method) OpticsConfig (class in de_twin.optics) options (de_twin.specimen.SpecimenConfig attribute) output_shape() (de_twin.detector.Detector method) overview() (de_twin.specimen.Specimen method) P pan_cache_size (de_twin.render.RenderConfig attribute) pan_margin (de_twin.render.RenderConfig attribute) park (de_twin.state.ScanRequest attribute) park_on_feature (de_twin.render.RenderConfig attribute) park_position (de_twin.state.ScanRequest attribute) perturb() (de_twin.column.corrector.Corrector method) (de_twin.column.CorrectorUnit method) phase_error_at() (de_twin.optics.aberrations.Aberrations method) phase_texture_scale (de_twin.render.RenderConfig attribute) pi4_angle_mrad() (de_twin.column.corrector.Corrector method) (de_twin.column.MeasurementResult method) pixel_offset (de_twin.state.ScanRequest attribute) pixel_scale() (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) pixel_scale_sigma (de_twin.optics.realism.ColumnRealism attribute) pixel_size_override_nm (de_twin.optics.OpticsConfig attribute) pixel_um (de_twin.detector.CameraModel attribute) points (de_twin.state.ScanRequest attribute) polar() (de_twin.optics.aberrations.Aberrations method) poll() (de_twin.column.MirrorColumn method) poll_corrector() (de_twin.column.MirrorColumn method) poll_request() (de_twin.transport.shm.FrameProducer method) port (de_twin.faces.deapi_server.TwinDeapiServer property) (de_twin.faces.temchannel_soap.TemChannelServer property) post_correct() (de_twin.column.CorrectorUnit method) post_fetch_alignment() (de_twin.column.CorrectorUnit method) post_get_config() (de_twin.column.CorrectorUnit method) post_magnification (de_twin.optics.OpticsConfig attribute) post_measure_c1a1() (de_twin.column.CorrectorUnit method) post_put_alignment() (de_twin.column.CorrectorUnit method) post_readback() (de_twin.column.CorrectorUnit method) post_reconnect() (de_twin.column.CorrectorUnit method) post_set_config() (de_twin.column.CorrectorUnit method) post_tableau() (de_twin.column.CorrectorUnit method) power_w (de_twin.state.HolderState attribute) precession_descan (de_twin.state.MicroscopeState attribute) precession_hz (de_twin.state.MicroscopeState attribute) precession_mrad (de_twin.state.MicroscopeState attribute) precession_on (de_twin.state.MicroscopeState attribute) prefetch (de_twin.render.RenderConfig attribute) prefetch() (de_twin.render.Renderer method) preparation (de_twin.specimen.SpecimenConfig attribute) pressure_mbar (de_twin.state.HolderState attribute) preview_side (de_twin.render.RenderConfig attribute) probe_aberrations (de_twin.state.MicroscopeState attribute) probe_d0_nm (de_twin.optics.OpticsConfig attribute) probe_footprint_blend (de_twin.render.RenderConfig attribute) probe_mode (de_twin.state.MicroscopeState attribute) probe_mode_current_factor (de_twin.optics.OpticsConfig attribute) Processor (class in de_twin.processing) processor (de_twin.twin.DigitalTwin property) project_for() (de_twin.optics.Calibration method) projection (de_twin.state.MicroscopeState attribute) property_names() (de_twin.column.Column static method) property_value() (de_twin.faces.temchannel_soap.TemChannelServer method) publish() (de_twin.transport.shm.FrameProducer method) R ramp() (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) raster_is_local (de_twin.specimen.Specimen attribute) raster_threads (de_twin.render.RenderConfig attribute) rasterize() (de_twin.specimen.Specimen method) RAW (de_twin.state.ExposureMode attribute) raw_frame() (de_twin.twin.DigitalTwin method) read() (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) (de_twin.transport.shm.FrameConsumer method) read_noise_adu (de_twin.detector.CameraModel attribute) real (de_twin.column.MirrorColumn property) (de_twin.holder.ImpulseFollower attribute) (de_twin.holder.SimHeatingHolder attribute) realism (de_twin.optics.OpticsConfig attribute) realistic() (de_twin.optics.OpticsConfig class method) reason (de_twin.holder.ImpulseFollower attribute) recip_pixel_inv_nm() (de_twin.optics.Calibration method) reference_condenser_index (de_twin.optics.OpticsConfig attribute) reference_current_pa (de_twin.optics.OpticsConfig attribute) reference_ht_kv (de_twin.detector.CameraModel attribute) reference_spot (de_twin.optics.OpticsConfig attribute) references() (de_twin.processing.Processor method) refraction_loss (de_twin.render.RenderConfig attribute) render() (de_twin.render.Renderer method) render_mode (de_twin.state.FrameMeta attribute) render_mode_override (de_twin.optics.OpticsConfig attribute) RenderConfig (class in de_twin.render) Renderer (class in de_twin.render) RenderMode (class in de_twin.state) repeats (de_twin.state.ScanRequest attribute) request() (de_twin.twin.DigitalTwin method) request_changed() (de_twin.transport.shm.FrameProducer method) required_layers() (de_twin.specimen.Specimen method) reset_clock() (de_twin.specimen.Specimen method) reset_serial() (de_twin.twin.DigitalTwin method) residual() (de_twin.column.CorrectorUnit method) residual_dict() (de_twin.column.corrector.Corrector method) resistance_ohm (de_twin.state.HolderState attribute) resolved_film() (de_twin.specimen.SpecimenConfig method) resolved_options() (de_twin.specimen.SpecimenConfig method) reuse_min_overlap (de_twin.render.RenderConfig attribute) reuse_rasters (de_twin.render.RenderConfig attribute) rings() (de_twin.crystal.library.CrystalLibrary method) roi (de_twin.state.ScanRequest attribute) roi() (de_twin.detector.Detector method) rotation_deg (de_twin.state.ScanRequest attribute) rotation_jitter_deg (de_twin.optics.realism.ColumnRealism attribute) rotation_rad() (de_twin.optics.realism.ColumnRealism method) (de_twin.optics.serialem.ColumnDefinition method) S sa_aperture_um (de_twin.optics.OpticsConfig attribute) safe_dose_e_per_px_s() (de_twin.twin.DigitalTwin method) sample_resistance() (de_twin.holder.SimHeatingHolder method) saturation_adu (de_twin.detector.CameraModel attribute) save_alignment() (de_twin.column.corrector.Corrector method) scaled() (de_twin.optics.aberrations.Aberrations method) scaled_diffraction_saturation (de_twin.render.RenderConfig attribute) scan (de_twin.state.AcquisitionRequest attribute) scan_point (de_twin.state.FrameMeta attribute) scan_point() (de_twin.twin.DigitalTwin method) scan_point_for() (de_twin.render.Renderer method) ScanRequest (class in de_twin.state) screen_position (de_twin.state.MicroscopeState attribute) screen_positions() (de_twin.column.ColumnAdapter method) seed (de_twin.optics.realism.ColumnRealism attribute) (de_twin.render.Renderer property) (de_twin.specimen.SpecimenConfig attribute) (de_twin.state.AcquisitionRequest attribute) seed_from() (de_twin.column.lowdose.LowDose method) segment_shape (de_twin.detector.CameraModel attribute) sensor_family (de_twin.detector.CameraModel attribute) sensor_h (de_twin.detector.CameraModel property) sensor_shape (de_twin.detector.CameraModel attribute) sensor_w (de_twin.detector.CameraModel property) serve_forever() (de_twin.faces.deapi_server.TwinDeapiServer method) served (de_twin.column.corrector.Corrector property) set() (de_twin.clock.ManualClock method) (de_twin.column.Column method) (de_twin.column.ColumnAdapter method) (de_twin.column.corrector.Corrector method) (de_twin.column.MirrorColumn method) (de_twin.column.SoapTemChannelClient method) (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) set_alpha_selector() (de_twin.column.Column method) set_beam_blank() (de_twin.column.Column method) set_beam_shift_um() (de_twin.column.Column method) set_beam_tilt() (de_twin.column.corrector.Corrector method) (de_twin.column.CorrectorUnit method) set_beam_tilt_mrad() (de_twin.column.Column method) set_camera_length_cm() (de_twin.column.Column method) set_camera_length_mm() (de_twin.column.Column method) set_column_valves() (de_twin.column.Column method) set_condenser_aperture() (de_twin.column.Column method) set_condenser_stig() (de_twin.column.Column method) set_convergence_mrad() (de_twin.column.Column method) set_corrector_beam_tilt() (de_twin.column.SoapTemChannelClient method) set_defocus_um() (de_twin.column.Column method) set_diffraction_shift_mrad() (de_twin.column.Column method) set_function_mode() (de_twin.column.Column method) set_ht_kv() (de_twin.column.Column method) set_image_shift_um() (de_twin.column.Column method) set_instrument_type() (de_twin.column.Column method) set_intensity() (de_twin.column.Column method) set_magnification() (de_twin.column.Column method) set_magnification_index() (de_twin.column.Column method) set_objective_stig() (de_twin.column.Column method) set_options() (de_twin.specimen.Specimen method) set_probe_mode() (de_twin.column.Column method) set_projection() (de_twin.column.Column method) set_residual() (de_twin.column.CorrectorUnit method) set_screen() (de_twin.column.Column method) set_specimen() (de_twin.twin.DigitalTwin method) set_spot_size() (de_twin.column.Column method) set_stage() (de_twin.column.Column method) set_stage_position() (de_twin.column.SoapTemChannelClient method) set_tem_stem() (de_twin.column.Column method) set_time_scale() (de_twin.clock.Clock method) (de_twin.clock.ManualClock method) settle_s (de_twin.render.RenderConfig attribute) ShmFace (class in de_twin.faces.shm_face) shutter_cmd (de_twin.state.AcquisitionRequest attribute) side (de_twin.column.MeasurementResult attribute) sigma_nm (de_twin.column.MeasurementResult attribute) SimHeatingHolder (class in de_twin.holder) simulate_measurement() (de_twin.column.CorrectorUnit method) size (de_twin.state.ScanRequest attribute) sleep() (de_twin.clock.Clock method) (de_twin.clock.ManualClock method) sleep_until() (de_twin.clock.Clock method) snap() (de_twin.twin.DigitalTwin method) snap_cl() (de_twin.optics.Calibration method) snap_mag() (de_twin.optics.Calibration method) SoapError SoapTemChannelClient (class in de_twin.column) Specimen (class in de_twin.specimen) specimen_pixel_nm() (de_twin.optics.Calibration method) SpecimenConfig (class in de_twin.specimen) spot_exponent (de_twin.optics.OpticsConfig attribute) spot_size (de_twin.column.lowdose.LowDoseArea attribute) (de_twin.state.MicroscopeState attribute) stage (de_twin.state.MicroscopeState attribute) stage_error_um (de_twin.state.MicroscopeState attribute) stage_offset_um (de_twin.optics.OpticsConfig attribute) stage_position() (de_twin.column.Column method) stage_target() (de_twin.column.Column method) stage_xy() (de_twin.column.ColumnAdapter method) start() (de_twin.column.MirrorColumn method) (de_twin.faces.deapi_server.TwinDeapiServer method) (de_twin.faces.shm_face.ShmFace method) (de_twin.faces.temchannel_soap.TemChannelServer method) start_on_specimen() (de_twin.twin.DigitalTwin method) state() (de_twin.column.Column method) (de_twin.column.MirrorColumn method) (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) stats (de_twin.render.Renderer property) status() (de_twin.column.corrector.Corrector method) (de_twin.column.CorrectorUnit method) (de_twin.column.SoapTemChannelClient method) STEM_4D (de_twin.state.RenderMode attribute) stem_current_factor (de_twin.optics.OpticsConfig attribute) stem_default_convergence_mrad (de_twin.optics.OpticsConfig attribute) stem_model (de_twin.render.RenderConfig attribute) stem_model() (de_twin.render.Renderer method) (de_twin.twin.DigitalTwin method) STEM_PARKED (de_twin.state.RenderMode attribute) stem_source_size_nm (de_twin.optics.OpticsConfig attribute) stem_step_nm() (de_twin.optics.Calibration method) step_um (de_twin.state.ScanRequest attribute) stig_nm_per_unit (de_twin.optics.OpticsConfig attribute) stop() (de_twin.column.Column method) (de_twin.column.ColumnAdapter method) (de_twin.column.MirrorColumn method) (de_twin.column.SoapTemChannelClient method) (de_twin.faces.deapi_server.TwinDeapiServer method) (de_twin.faces.shm_face.ShmFace method) (de_twin.faces.temchannel_soap.TemChannelServer method) (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) store() (de_twin.column.lowdose.LowDose method) store_dark() (de_twin.processing.Processor method) store_gain() (de_twin.processing.Processor method) super_resolution (de_twin.state.AcquisitionRequest attribute) super_resolution() (de_twin.detector.Detector method) supports_hw_roi_x (de_twin.detector.CameraModel attribute) synthesize_gain() (de_twin.processing.Processor method) T t_done (de_twin.column.MeasurementResult attribute) t_s (de_twin.state.HolderState attribute) t_start (de_twin.column.MeasurementResult attribute) tab_type (de_twin.column.MeasurementResult attribute) take_dark() (de_twin.processing.Processor method) take_gain() (de_twin.processing.Processor method) target_c (de_twin.state.HolderState attribute) TEM_DIFFRACTION (de_twin.state.RenderMode attribute) tem_illuminated_area_um (de_twin.optics.OpticsConfig attribute) TEM_IMAGING (de_twin.state.RenderMode attribute) tem_stem (de_twin.state.MicroscopeState attribute) TemChannelServer (class in de_twin.faces.temchannel_soap) temperature_c (de_twin.specimen.Specimen property) (de_twin.state.HolderState attribute) template_library() (de_twin.crystal.library.CrystalLibrary method) texture_bandlimit_nm (de_twin.render.RenderConfig attribute) texture_seed_salt (de_twin.render.RenderConfig attribute) thermal_budget_s (de_twin.specimen.Specimen property) tilt() (de_twin.column.ColumnAdapter method) tilt_to() (de_twin.column.ColumnAdapter method) time_dependent (de_twin.specimen.Specimen property) time_index (de_twin.specimen.Specimen property) time_quantum_s (de_twin.render.RenderConfig attribute) time_s (de_twin.specimen.Specimen property) (de_twin.state.FrameMeta attribute) time_to_idle() (de_twin.column.Column method) (de_twin.column.CorrectorUnit method) to_dict() (de_twin.state.MicroscopeState method) to_serialem() (in module de_twin.optics.serialem) to_string() (de_twin.column.MeasurementResult method) topology (de_twin.detector.CameraModel attribute) total() (de_twin.column.CorrectorUnit method) total_frames (de_twin.state.AcquisitionRequest attribute) TRIAL (de_twin.state.ExposureMode attribute) TwinDeapiServer (class in de_twin.faces.deapi_server) U unit() (de_twin.column.corrector.Corrector method) update() (de_twin.specimen.Specimen method) url (de_twin.faces.temchannel_soap.TemChannelServer property) V VACUUM (de_twin.state.ExposureMode attribute) values() (de_twin.column.Column method) (de_twin.column.ColumnAdapter method) vendor (de_twin.column.ColumnAdapter property) virtual (de_twin.clock.Clock property) (de_twin.clock.ManualClock property) virtual_image() (de_twin.render.Renderer method) (de_twin.twin.DigitalTwin method) voltage_h (de_twin.state.ScanRequest attribute) voltage_v (de_twin.state.ScanRequest attribute) W wait() (de_twin.column.corrector.Corrector method) (de_twin.column.CorrectorUnit method) wait_for_control() (de_twin.holder.ImpulseFollower method) (de_twin.holder.SimHeatingHolder method) wait_idle() (de_twin.column.Column method) (de_twin.column.MirrorColumn method) wait_slot_free() (de_twin.transport.shm.FrameProducer method) warm_up() (de_twin.render.Renderer method) with_() (de_twin.detector.CameraModel method) with_options() (de_twin.specimen.SpecimenConfig method)