:orphan:

Example gallery
===============

Images, diffraction patterns and detector frames rendered by the twin. Every example
runs in-process on the small DESim sensor with a ``ManualClock``, so it is deterministic
and needs nothing else running.


.. raw:: html

  <div id='sg-tag-list' class='sphx-glr-tag-list'></div>


.. raw:: html

    <div class="sphx-glr-thumbnails">

.. thumbnail-parent-div-open

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The detector model adds what a DE camera adds: a dark offset with fixed pattern, read noise, shot noise, gain non-uniformity and defects. Integrated images are dark- and gain-corrected with references the twin measures, the way DE-Server delivers them.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_detector_references_thumb.png
    :alt:

  :doc:`/auto_examples/plot_detector_references`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Raw frames and references</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="One seeded specimen, gold particles on holey carbon over a copper mesh grid, seen from a low-magnification atlas down to single particles. The images are the noiseless electron flux the twin renders before the detector model.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_magnification_thumb.png
    :alt:

  :doc:`/auto_examples/plot_magnification`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Zooming in on a seeded specimen</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The same gold particle in diffraction as the probe converges. Parallel illumination gives spots; nano-beam diffraction gives disks whose radius is the convergence angle; convergent beam disks grow until they overlap.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_convergence_thumb.png
    :alt:

  :doc:`/auto_examples/plot_convergence`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Probe convergence: spots to disks</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="A simulated heating chip is stepped to 650 C. Every droplet is its own crystal, and each nucleates as the thermal budget accumulates: the glassy halo gives way to spotty powder rings. A ManualClock lets the anneal run as fast as the renderer allows.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_insitu_heating_thumb.png
    :alt:

  :doc:`/auto_examples/plot_insitu_heating`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">In-situ heating</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="TEM imaging is wave-optical: amorphous carbon shows Thon rings whose spacing follows the defocus and which turn elliptical with objective astigmatism, so autofocus and CTF tools can be tested against known values.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_focus_ctf_thumb.png
    :alt:

  :doc:`/auto_examples/plot_focus_ctf`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Defocus, astigmatism and the CTF</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Every grain is a crystal with a full 3D orientation (orix), and diffraction comes from diffsims structure factors. Tilting the stage moves grains through Bragg conditions: the Laue circle of a silicon lamella sweeps across its pattern, and gold grains in a thin film switch between dark and bright in bright-field images.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_tilt_series_thumb.png
    :alt:

  :doc:`/auto_examples/plot_tilt_series`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Tilting real crystals</div>
    </div>


.. thumbnail-parent-div-close

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/plot_detector_references
   /auto_examples/plot_magnification
   /auto_examples/plot_convergence
   /auto_examples/plot_insitu_heating
   /auto_examples/plot_focus_ctf
   /auto_examples/plot_tilt_series



.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_